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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015930102.1_cds_XP_016477244.1_68991
CDS Infomation

[gene=LOC107798727] [db_xref=GeneID:107798727] [protein=probable tocopherol cyclase, chloroplastic] [protein_id=XP_016477244.1] [location=join(53552..53871,54443..54687,55172..55251,55566..55642,56646..56815,57713..57810,58264..58371,58542..58658,58859..59008,59924..60100)] [gbkey=CDS]
Sequence

ATGGAGAACATATACAATTTATCCACCATCTCTCCAATTTGTCAGCCAAAGAAAAACCTT
GGATTTTCTTGGACTGTTACTAATTCTGCAACTTCAGTGACAAATGGGAAAATTCTCTCT
TTGACCAAGTTCAAGAATTTGAACACTTTCTCATCAACCTTGAAGCTGCAGTGTCAAAAA
TCAAGACATGCATGTGTAGTGAAAGCAGTCGCAGGAGCTGATTCATCTGTTGAAATGATT
AAAGAGGAAAATAGGGAGGTTGTAAAACCGATTTACTCTTCTACACCTTCTAATCGTCCG
CTTCGAACTCCTCATAGCGGGTACCATTTTGATGGAAGTAGCAGAAAATTCTTTGAAGGT
TGGTTCTTTAAGGTATCAATTCCAGAATGCAGACAGAGTTTCTGCTTTATGTATTCTGTA
GAGAATCCTGCATTTCCAAAGAAATTGAGTAGCTTTGAGGAGCTGCAATATGGACCTCGC
TTTACTGGAGTGGGAGCTCAAATTCTTGGTCCAGATGACAAGTATATTTGTCAATATACT
CAAGAGTCTTCAAACTTCTGGGGAAGTAGCCATGAACTGATGCTTGGGAACACCTTCATT
ACCCAAAATAGTGCTAGGTCTCCAAAAAAAGAAGTTCCTCCTCAGGAGTTTAATCGCCGT
GTTGTAGAGGGCTTTCAAGTTACCCCACTTTGGCATCAAGGAAGTATTCGCGATGACGGG
AGGACAGATTATACTGAAATTGTGAAAACTGCTAGCTGGGAGTATAGCACGCGGCCCATT
TATGGATGGGGTGACGTTAACTCAAAGCAGAAGTCCACAGCAGGATGGCCTGCTGCTTTT
CCTGTATTTGAACCGCATTGGCAAATATGCATGGCAGCTGGACTTTCAACAGGCTGGATA
GAGTGGGATGGTCAGCGGTATGAGTTTCAAAATGCTCCTTCGTACTCTGAAAAGAACTGG
GGTGGTGCCTTCCCAAGAAAGTGGTTTTGGGTGCAATGCAGTGTCTTTGAAGGTGCAATT
GGAGATGTTGCTTTGACTGCTGGTGGTGGATTGAGGCAACTTCCTGGATTGAGTCAGACT
TTCGAAAATGCTGCTTTGATAGGAATTCACTATGGAGGTATTTTCTATGAATTTGTTCCA
TGGAATGCTAGCGTTAGTTGGGAAATTGCTCAATGGGGTAAATGGCATATACTTGGGGAG
AATGAGACACATACAGTAGAACTGGAAGCAACGGTGGAAGATCCTGGTACCACATTACGC
GCTCCCACAGATGAGATGGGTCTCGCTCCTGCATGTAGAGACACTTGTTTCGGTGATCTA
AGACTGCAATTGTGGGAACGAAAGAGTAATGGAAGTAAAGGAAAGGTTATTTTGGATGTT
AGAAGCAATATGGCAGGTCTAGAAGTTGGGGGAGGACCATGGTTCAACACATGGAAGGGA
AAAGCACAGATGCCAGAAATTGTTACTCGAGCTATTAACGTTCCTGTGGATTTGGATGGT
ATATTCCGCTTCACTCCATTTCTCAAACCCCCTGGCCTGTAA

Peptide Sequence

PEP ID

XP_016477244.1
PEP Infomation

PREDICTED: probable tocopherol cyclase, chloroplastic [Nicotiana tabacum]
Sequence

MENIYNLSTISPICQPKKNLGFSWTVTNSATSVTNGKILSLTKFKNLNTFSSTLKLQCQK
SRHACVVKAVAGADSSVEMIKEENREVVKPIYSSTPSNRPLRTPHSGYHFDGSSRKFFEG
WFFKVSIPECRQSFCFMYSVENPAFPKKLSSFEELQYGPRFTGVGAQILGPDDKYICQYT
QESSNFWGSSHELMLGNTFITQNSARSPKKEVPPQEFNRRVVEGFQVTPLWHQGSIRDDG
RTDYTEIVKTASWEYSTRPIYGWGDVNSKQKSTAGWPAAFPVFEPHWQICMAAGLSTGWI
EWDGQRYEFQNAPSYSEKNWGGAFPRKWFWVQCSVFEGAIGDVALTAGGGLRQLPGLSQT
FENAALIGIHYGGIFYEFVPWNASVSWEIAQWGKWHILGENETHTVELEATVEDPGTTLR
APTDEMGLAPACRDTCFGDLRLQLWERKSNGSKGKVILDVRSNMAGLEVGGGPWFNTWKG
KAQMPEIVTRAINVPVDLDGIFRFTPFLKPPGL

Transcript Sequence

Gene sequence data has not been registered.